PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0442171

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 273aa MW: 30155.8 Da PI: 5.8874

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0442171	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H RcHm_v2.0_Chr4g0442171 100 FSCNYCKRKFFSSQALGGHQNAH 122 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MITVPNLNLE FESDNLEVTS QVTSNNIAQQ DETPDPSKDS TTTSSCLTNQ TNLEQNPGPM 60 FLDLSLQFSS NDLELKGMAG ETNSEIEAAP DSEAAIPRVF SCNYCKRKFF SSQALGGHQN 120 AHKRERTMAK RALRMGMFPD HRYTSLASLP LHGSSASAFR SLGIEAHAAM HQNMLIQPDQ 180 RLPVPDTRGV ARFQQQGYYG VPMPMPPMPM FMEDDDVAMF WPGSFRQVGE GIRGHFNVDQ 240 YAQNSRMINS GRTVPPKSST SSSSSSPDLT LKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	4e-39	C2H2 family protein