PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0442621
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 488aa    MW: 55655.1 Da    PI: 4.45
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0442621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.12.1e-31251152101
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k ye+++dee++++iswse+++sfv+ d ++f+  +Lpk Fkhsnf+SF+RQLn+YgF+k++ ++           F+++ F +
  RcHm_v2.0_Chr4g0442621  25 FLRKCYEMVDDEETDSIISWSESNDSFVIRDVTQFSVLMLPKNFKHSNFSSFMRQLNIYGFRKIDPDH---------YVFANEGFIR 102
                             9*****************************************************************99.........67******** PP

                             XXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkk 101
                             g+k+ll++i r+k
  RcHm_v2.0_Chr4g0442621 103 GQKHLLKNIFRRK 115
                             *********9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    
MVRKSKEKEK TGDGSGSAEG SVPPFLRKCY EMVDDEETDS IISWSESNDS FVIRDVTQFS  60
VLMLPKNFKH SNFSSFMRQL NIYGFRKIDP DHYVFANEGF IRGQKHLLKN IFRRKYPQGT  120
DQSKTLQQKD NQRDDPDEPS EDIESGLWRE VENLKIDKIS LKQELVKLRQ HQEISENNLL  180
LLRDRLHGME KDQQQMLSFL VMAMQNPGFL VQLVQSKEHS WRFAEAGNML EEVDDGRPMA  240
ADGAIVRYQP LMDEAPEPVF TPHSGSEIQP EIDSFVNSDG VIVRYQPVDE APDPVFTPNF  300
VSEKQPEFDS YPDGVGDSFM NSDGAIVRYR SPMDAAPKPI LTQSSGSGKQ PEFDSYPDGM  360
KDFFVNSDLV KMLMDDKLSP RENHAPFILP DADVDDNAWE KLLLTSYLLE NTEGAKEERK  420
EPEDSRMEVE STAAELDESK NFDSLIEQMN KSVHGSNMEN SRNLEFIGEH LGLMASEPNK  480
KQETQLGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.12e-80HSF family protein