PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0442781
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 667aa    MW: 72428.2 Da    PI: 6.9204
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0442781genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.42.7e-27235288155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gL++e+v+SHLQk+Rl
  RcHm_v2.0_Chr4g0442781 235 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLSRENVASHLQKFRL 288
                             79*******************.********************************8 PP
2Myb_DNA-binding39.11.7e-12237287148
                             TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                             r  W+ e+++++v av+qlG +   +k+I + m+  g++++++ s++qk++
  RcHm_v2.0_Chr4g0442781 237 RVVWSVELHQQFVSAVNQLGLDkaVPKRILELMNvPGLSRENVASHLQKFR 287
                             678**********************************************97 PP
3Response_reg77.54.7e-26491571109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl+vdD+ + + +l+q+l++  y +v+ ++++++al+ l+ek+  +D++l D+ mp+mdG++ll+ i  e  +lp+i+++a g  + 
  RcHm_v2.0_Chr4g0442781  49 VLVVDDDTTCLAILEQMLRRCLY-QVTLCSQATDALNHLREKKgyFDVVLSDVHMPDMDGFKLLECIGLEM-DLPVIMMSADGRTSA 133
                             89*********************.***************999999**********************6654.8************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + ++ Ga d+l Kp+ +eel +
  RcHm_v2.0_Chr4g0442781 134 VMKGIRHGACDYLIKPVREEELKN 157
                             *********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    
MAALQSVVQS CLSTTTASSF GSCKGGGGAS SASANVMAVH DQFPAGLRVL VVDDDTTCLA  60
ILEQMLRRCL YQVTLCSQAT DALNHLREKK GYFDVVLSDV HMPDMDGFKL LECIGLEMDL  120
PVIMMSADGR TSAVMKGIRH GACDYLIKPV REEELKNIWQ HVARKKLNEN KEIEHSGSLE  180
DNDRHKRGIN DVEYTSSVIE GTEGTARTRS QKKRSSGKED EDGDMENDDM STSKKPRVVW  240
SVELHQQFVS AVNQLGLDKA VPKRILELMN VPGLSRENVA SHLQKFRLYL KRLSVEQQQS  300
ANAFCGPVES NVKLVSHGNR FDIQALAAAG QIPPQTLAAL QAELLGQPVG NPGSTIDQPA  360
ILHASLQRPK RAPVDHGVAF GQPLIKRQSN VSVHFPQCII SAEDASAGGP WRSNSLGTVA  420
PNSNLGGFST QNSNVFMDTL QQEQRPQPKR HQQSLLTEPV RTINVQPSCL VVPSQSSASF  480
QAGNSPASVN QSCSFNRSTA IDYSLLSAQS NNNSSLNIGR ISNGHHKTPG ILSGYSATGS  540
LSTPSSSVIA ESSISPQNSA VTYSDARQLT GRLHNMSNIQ DLYVPKSGEM LDQGAYRNLG  600
FVGKETRIPS RFDEFESQSN LNHGNIHAEN IGNPVKQEPN MGFVDNAKGS PIFQQFSSSD  660
LMSVFNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-115ARR-B family protein