PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0443331
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 478aa    MW: 51916 Da    PI: 6.7994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0443331genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00012121143123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             + Cp+Cgk F++ ++   H  ++
  RcHm_v2.0_Chr4g0443331 121 FDCPICGKAFRSEDEVSIHVDSC 143
                             77*************99998766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    
MDDMKDKVKG FIKNPFSSSS SGKFKGQGRV LGSSSAGPAN SPILGRASQP PQSKPNPIST  60
SKSSSSTSKP SPQRTQSLDQ KRPELPTEPK PNRKPQEGFD PFDALITPGK RSQNGFTLNV  120
FDCPICGKAF RSEDEVSIHV DSCVNNSADN ESAEGVSGSV ESVETSRSGL DACIGTFASG  180
NPGSGSVEVV LRLLRNIVRE PENVKFRKVR MSNPKIREAI GEVVGGIELL EFVGFELKEE  240
EGEMWAVMEV PSAEQIGVMK KGVELLEPPK VQEPQKKEKL TSAGLGDLDE QIEPKKVDRQ  300
TRVFFSVSES VAAKIELPES FYSLSAMELK REAEARKKKI DDSQMLIPKS YREKQAKAAK  360
KRYTKTVIRV QFPDGVVLQG VFSPAEPTSA LYEYVSLALK EPSLEFELLN PAAIKRRVIP  420
HSPAAGERPA TLADEDLVPS ALVKFKPIET DSIVFTGLCN ELLQISEPLG SGSAVGHA