PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0445361

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 470aa MW: 51771.7 Da PI: 8.6524

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0445361	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.6e-06	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H RcHm_v2.0_Chr4g0445361 71 YVCEICNQGFQRDQNLQMHRRRH 93 9*********************9 PP
2	zf-C2H2	15.3	5.5e-05	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ RcHm_v2.0_Chr4g0445361 149 WVCDKCSKGYAVQSDYKAHLKTC 171 58*******************98 PP
3	zf-C2H2	10.9	0.0015	179	197	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ RcHm_v2.0_Chr4g0445361 179 DCGRVFSRVESFIEHQDTC 197 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MLANNNHTNT SASSAAPSSS SDHHHAFTPL ENGAAAAAAT NKRKRRPAGT PDPDAEVVSL 60 SPKTLLESDR YVCEICNQGF QRDQNLQMHR RRHKVPWKLL KREIQDQVKK RVFVCPEPSC 120 LHHDPCHALG DLVGIKKHFR RKHSNHKQWV CDKCSKGYAV QSDYKAHLKT CGTRGHSCDC 180 GRVFSRVESF IEHQDTCSVR HVVRPELQAL QPAAACSSRT ASSTSPSSDG HFSINNNNNA 240 APPLPGLPVM PKPNDQPVVF ISSHEGHDGN PSTSNHQHQQ PREQVLELKL LPSSDTQTSP 300 RNEDENYATH LKLSIGGSSR GGDQKNDSPR SSSREMNTNI GFGGRASREV ARLKDFASEE 360 LKLAMAEKAY AEDARREAKR QIEMAELEFA NAKRIRQQAQ AELQKAQLLK EQSTKKISSA 420 IMQITCPSCK QHFHASNPSN AVGVGPSVDE TTSLGMSYMS SATTEGEGEQ

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MLANNNHTNT SASSAAPSSS SDHHHAFTPL ENGAAAAAAT NKRKRRPAGT PDPDAEVVSL  60
SPKTLLESDR YVCEICNQGF QRDQNLQMHR RRHKVPWKLL KREIQDQVKK RVFVCPEPSC  120
LHHDPCHALG DLVGIKKHFR RKHSNHKQWV CDKCSKGYAV QSDYKAHLKT CGTRGHSCDC  180
GRVFSRVESF IEHQDTCSVR HVVRPELQAL QPAAACSSRT ASSTSPSSDG HFSINNNNNA  240
APPLPGLPVM PKPNDQPVVF ISSHEGHDGN PSTSNHQHQQ PREQVLELKL LPSSDTQTSP  300
RNEDENYATH LKLSIGGSSR GGDQKNDSPR SSSREMNTNI GFGGRASREV ARLKDFASEE  360
LKLAMAEKAY AEDARREAKR QIEMAELEFA NAKRIRQQAQ AELQKAQLLK EQSTKKISSA  420
IMQITCPSCK QHFHASNPSN AVGVGPSVDE TTSLGMSYMS SATTEGEGEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	47	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-137	C2H2 family protein