PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0445441
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 222aa    MW: 25176 Da    PI: 8.2125
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0445441genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF771.4e-241562249
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            + en+sn+qvtfskRr+gi+KKA ELSvLC+a va+i+fs  gk++ y
  RcHm_v2.0_Chr4g0445441 15 KLENSSNKQVTFSKRRAGIFKKAGELSVLCGAHVAIIVFSGAGKVFCY 62
                            679*****************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MSKKTQGRKK IEIKKLENSS NKQVTFSKRR AGIFKKAGEL SVLCGAHVAI IVFSGAGKVF  60
CYGHPNINTV LESYQNGLSS VVRVNEEAGD LLVAEFNKEY VEAEKEFEDL KRKATGIKQM  120
ADEKKKMMKE MNMSEGFWWD EAVDLAMMDE REWEQYFKAL EELRRKVAAR VDELKILNGT  180
MMGPPVPAVH HRLCHVPFMT SNNCFGNCQD VQFGSGYHDL GV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.11e-28M-type_MADS family protein