PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0445611
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 306aa    MW: 34028.3 Da    PI: 8.8533
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0445611genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-322275255
                 G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            prlrWtpeLH++Fv+a+e+LGG++kAtPk +l++m+vkgLt++hvkSHLQ++R+
  RcHm_v2.0_Chr4g0445611 22 PRLRWTPELHHCFVQAIERLGGHKKATPKLVLQIMDVKGLTISHVKSHLQMFRS 75
                            8****************************************************7 PP
2Myb_DNA-binding49.78.3e-162374148
                            TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48
                            r+rWT+e++  +v+a+++lGg+   t+k++ + m  kg+t  ++ks++q+++
  RcHm_v2.0_Chr4g0445611 23 RLRWTPELHHCFVQAIERLGGHkkaTPKLVLQIMDvKGLTISHVKSHLQMFR 74
                            89***********************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MSTSSSCGRN GAVRPYIRSK VPRLRWTPEL HHCFVQAIER LGGHKKATPK LVLQIMDVKG  60
LTISHVKSHL QMFRSMRGDL SRAPADGSFT QQRKQSFEEH SDGCLDHEVN VMGLVSASKL  120
IPESDPQVIY SVPRRSKPIR ESDPQAIYTN PSSSKRARIE TTSCSVSEQQ QRQWSQTTHE  180
TAPYTFNDYG GVLANGVSLP QQHHFLYNFN PFFKSALQES DFFKIDEKHE LKMHKQESRG  240
RALTEGGDCQ LSLSLSLPHP SSHMSNASSS EEMGGAISSL KYKDCSAFSS ASRGVDLNLS  300
IALCGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-32G2-like family protein