PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0445661

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 585aa MW: 62556.8 Da PI: 9.1255

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0445661	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H RcHm_v2.0_Chr4g0445661 73 FICEVCNKGFQREQNLQLHRRGH 95 89*******************88 PP
2	zf-C2H2	12.5	0.00044	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ RcHm_v2.0_Chr4g0445661 149 WKCDKCSKRYAVQSDWKAHSKTC 171 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MAASSSSLFG IREEDQNLMK QQQHSSSTPT SSTAAAPLAP PPQKKKRNQP GTPNPEAEVI 60 ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEPK RKVYLCPEPT 120 CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRRDSF ITHRAFCDAL AQESARHQPN LSSLGSNLYG GTSNTGLALS HHHHQQQVVG 240 PNIDHHHHNN QSTAPADILR LGGGSGNART GQFDHLLSPP SMGSSFRPAQ SSAPFFINQD 300 QSSQQYHHDQ EQLQSKQFHG LMQFSDHQNN NSSSGGNLFN LPFLSNSSNS NNSNNAGGAN 360 STNLLLHPDH QYNSNGGEGG SILFSGHMMG GGGGDHMSSG NVSSLYSSQV QNNHHGAGAA 420 VSHMSATALL QKAAQMGSTT SSNNTSASLL RSFGSTSSTK SERPAAAASL VPANLGGIFG 480 GGSENENNLQ DLMNSFAAGG SSSIFGSGSF GSGFHDVASR DEPKLPAVSI VAGSDRLTRD 540 FLGVGQIVRS MSGGQQQTQI EHMSSLDSES NAAPSTQSFG GGGNF

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MAASSSSLFG IREEDQNLMK QQQHSSSTPT SSTAAAPLAP PPQKKKRNQP GTPNPEAEVI  60
ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEPK RKVYLCPEPT  120
CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AQESARHQPN LSSLGSNLYG GTSNTGLALS HHHHQQQVVG  240
PNIDHHHHNN QSTAPADILR LGGGSGNART GQFDHLLSPP SMGSSFRPAQ SSAPFFINQD  300
QSSQQYHHDQ EQLQSKQFHG LMQFSDHQNN NSSSGGNLFN LPFLSNSSNS NNSNNAGGAN  360
STNLLLHPDH QYNSNGGEGG SILFSGHMMG GGGGDHMSSG NVSSLYSSQV QNNHHGAGAA  420
VSHMSATALL QKAAQMGSTT SSNNTSASLL RSFGSTSSTK SERPAAAASL VPANLGGIFG  480
GGSENENNLQ DLMNSFAAGG SSSIFGSGSF GSGFHDVASR DEPKLPAVSI VAGSDRLTRD  540
FLGVGQIVRS MSGGQQQTQI EHMSSLDSES NAAPSTQSFG GGGNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-116	C2H2 family protein