PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0445671

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 602aa MW: 64463.2 Da PI: 9.5489

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0445671	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H RcHm_v2.0_Chr4g0445671 79 FICEVCNKGFQREQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	13.1	0.00029	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ RcHm_v2.0_Chr4g0445671 155 WKCEKCSKRYAVQSDWKAHSKTC 177 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MAAASSSLAF FGSNSREENQ NQLMSSLQQP SPASSTAPIS TTTPTAPPPK KRRNQPGNPN 60 PDAEVIALSP KTLMATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK TNKEPKRKVY 120 LCPEPTCVHH DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR 180 EYRCDCGTLF SRRDSFITHR AFCDALAQES ARHPSSLSAM ATSSHLYPGN NQMMSLGLSQ 240 MGGGSSLPPN NMLRLGTNGA GGAAKFEHLM NPSSFGQAQP IPNSSTTFFN QGFQDQQHSL 300 NGPYAANKSL HGLMQLPDLQ SNTPSNNSPS STTTAAGSLF NLGFFSSNNS DHHQFSDGNG 360 GTQGTTLFPN GMADHIGSGL QSSLFGNSLQ HENMNGAHMS ATALLQKAAQ MGSTTSTESS 420 SLLRGLAGST SSSTRAVAKS ISGRQLVSSN STIGGVSFSR ESSSGGEHEQ HMRSQQQHVE 480 NENHHLQGLI MNSLTNGNSS AASIFGAAGD HHNNFGTHGF ANGSTTRVSL MDQQQHNNTN 540 FSNVDEAKLT LDFLGVGGIV RNMGGGGGGG YEHRGINMSS LDPELKSSQQ PSQPYGGTSA 600 LQ

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MAAASSSLAF FGSNSREENQ NQLMSSLQQP SPASSTAPIS TTTPTAPPPK KRRNQPGNPN  60
PDAEVIALSP KTLMATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK TNKEPKRKVY  120
LCPEPTCVHH DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF SRRDSFITHR AFCDALAQES ARHPSSLSAM ATSSHLYPGN NQMMSLGLSQ  240
MGGGSSLPPN NMLRLGTNGA GGAAKFEHLM NPSSFGQAQP IPNSSTTFFN QGFQDQQHSL  300
NGPYAANKSL HGLMQLPDLQ SNTPSNNSPS STTTAAGSLF NLGFFSSNNS DHHQFSDGNG  360
GTQGTTLFPN GMADHIGSGL QSSLFGNSLQ HENMNGAHMS ATALLQKAAQ MGSTTSTESS  420
SLLRGLAGST SSSTRAVAKS ISGRQLVSSN STIGGVSFSR ESSSGGEHEQ HMRSQQQHVE  480
NENHHLQGLI MNSLTNGNSS AASIFGAAGD HHNNFGTHGF ANGSTTRVSL MDQQQHNNTN  540
FSNVDEAKLT LDFLGVGGIV RNMGGGGGGG YEHRGINMSS LDPELKSSQQ PSQPYGGTSA  600
LQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-123	C2H2 family protein