PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0000091

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 201aa MW: 22566.9 Da PI: 8.3149

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0000091	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109	2.5e-34	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl RcHm_v2.0_Chr5g0000091 48 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 102 79****************************************************8 PP
2	Myb_DNA-binding	64.6	1.9e-20	50	101	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e++e++vdav+qlGg+ t+k + r mg +g+t +++ks++qky+ RcHm_v2.0_Chr5g0000091 50 RLRWTHELHERFVDAVAQLGGPdraTPKGVLRVMGvQGLTIYHVKSHLQKYR 101 89*************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MYQPNGAPSS GLIQNNLLVH GQYLDCGTNT MDNVNGAKSP SNSNLASKQR LRWTHELHER 60 FVDAVAQLGG PDRATPKGVL RVMGVQGLTI YHVKSHLQKY RLAKYLPDSS SDGGKADKKE 120 PGDMLSNVDG SSGMQITEAL KLQMEVQKRL HEQLEACFLY KFSFQLISIL CQELITIYCP 180 VFILVFSILT NYQWTYQFHA I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-73	G2-like family protein