PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0000111
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 312aa    MW: 34141.8 Da    PI: 6.8443
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0000111genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.85e-334296155
                 G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  RcHm_v2.0_Chr5g0000111 42 KPRLRWTADLHERFVDAVTQLGGAAKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 96
                            79****************************************************8 PP
2Myb_DNA-binding66.16.5e-214495148
                            TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48
                            r+rWT++++e++vdav+qlGg    t+k+I+rtm+ kg+tl ++ks++qky+
  RcHm_v2.0_Chr5g0000111 44 RLRWTADLHERFVDAVTQLGGAakaTPKAIMRTMNvKGLTLFHLKSHLQKYR 95
                            89******************99*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MFPRLMQPPP PPPPPPPLDG IEDMQGHNHR ADPCLVLTSD PKPRLRWTAD LHERFVDAVT  60
QLGGAAKATP KAIMRTMNVK GLTLFHLKSH LQKYRLGKQA GKDMDEVSKD ASYLLESPGT  120
GNSSPNLATS DMNEGYEVKE ALRVQMEVQS KLHVQVEAEK HLQIRQDAER RYMAMLERAC  180
KMLADQFIGG SVIDTDGHKY HGLGNKNPKS SSLDPLGFYS LQSTDVAGVH GPEEEVLTSV  240
HPQRADCSTE SCLTSHESPG GLTLEGSPGG GKKRMLSLES ATASLIWGEA KVRTQEINLA  300
PVEPHGITRY GI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-67G2-like family protein