PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0000501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 229aa    MW: 25205.3 Da    PI: 6.2323
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0000501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.71.9e-5448144197
                   NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                             vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl
  RcHm_v2.0_Chr5g0000501  48 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYL 134
                             69************************************************************************************* PP

                   NF-YB  88 kkyrelegek 97 
                             +++re+eg++
  RcHm_v2.0_Chr5g0000501 135 HRFREMEGDR 144
                             ********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSLVNPCAGL KLSEINMRLA EINHTKNSAA ITNNGAAAAT TDENECIVRE QDRFMPIANV  60
IRIMRKILPP HAKISDDAKE TIQECVSEYI SFITGEANER CQREQRKTIT AEDVLWAMSK  120
LGFDDYIEPL TLYLHRFREM EGDRGSMRAE TLMKTSSRAM TAAEYHAAAA GSFAGFAPFH  180
HHGFFGYLKD ASISNGAAGT SLSQQANAVA AMANGDHQAS HSQYDDNNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.17e-70NF-YB family protein