PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0002671

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 311aa MW: 35157.2 Da PI: 8.7954

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0002671	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104	8.7e-33	76	129	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrW+p+LH++Fv+ave+LGG+++AtPk ile+m+vkgLt++h+kSHLQ+YR+ RcHm_v2.0_Chr5g0002671 76 PRLRWSPDLHRCFVHAVERLGGEDRATPKLILEIMNVKGLTISHIKSHLQMYRS 129 8****************************************************7 PP
2	Myb_DNA-binding	50.5	4.7e-16	77	128	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rW+++++ +v+av++lGg+ t+k+I + m+ kg+t ++ks++q+y+ RcHm_v2.0_Chr5g0002671 77 RLRWSPDLHRCFVHAVERLGGEdraTPKLILEIMNvKGLTISHIKSHLQMYR 128 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MERVEIVDRL SSLVSSSSSS LDNGEVYSPN CSSFGDHAMR IAAQRMRVHY TTLPAHQISL 60 LKSSTTVRPY VRSKVPRLRW SPDLHRCFVH AVERLGGEDR ATPKLILEIM NVKGLTISHI 120 KSHLQMYRSM KHEKRIQEEA IAAKRNDKAN PSDSNNSYWL NSNKSTATPP TYCQRSNWMM 180 RNMYNSAPYQ SNRSYIEGID HKNTSTLAKW NNENYRQNSY FIFTDLVKRG SDDAQESNDQ 240 VKVLSFVNAG CQSNHSKPED LGGETETGAE IDAAMSPSLK SSSKAYYSQQ FRPSDSENSV 300 VNDVSLELSL T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	3e-35	G2-like family protein