PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0004451
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 144aa    MW: 15429.6 Da    PI: 10.0744
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0004451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF321.6e-101255245
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                            +i ++  r v f++Rr+g++KKA+ L  + +  +a+ ++s+tg+
  RcHm_v2.0_Chr5g0004451 12 PITDYQSRMVAFTRRRTGLFKKAQKLEEMSGSSIAIAVISETGQ 55
                            7999**************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    
MGTGKKKIDI EPITDYQSRM VAFTRRRTGL FKKAQKLEEM SGSSIAIAVI SETGQPYLHG  60
SPSLLERVLA SKASSSASTT TADAGSSTTT ATTGSLERFK AGVNSQIEAC TTLEEAEIVK  120
RKLLEIKKRA DGKLSGSDLQ FVLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-14M-type_MADS family protein