PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0004471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 248aa    MW: 26823.3 Da    PI: 6.549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0004471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-1286132554
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             +  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ +++L
  RcHm_v2.0_Chr5g0004471  86 KACREKMRRDRLNDKFLELSTILEPG---RPPKTDKAAILVDAVRMVNQL 132
                             678**********************8...89***************9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MAAPASSSSP PQNWVFDYDL IGNISVPGGD LPSLDPPGFS WGSDSFPAPT APSVDFDGSF  60
GNSEIMKETG SNKRARSGSC NVSGSKACRE KMRRDRLNDK FLELSTILEP GRPPKTDKAA  120
ILVDAVRMVN QLRGEAQNLK ESSESLQEKI TELKAEKNEL RDEKQRLKAE KENLERQIKA  180
LGTQPGFLPH PAAIPAPFSA PGQVVGGKLM PFMGYPGVSG YPGVSMWQFM PQAAVDTSQD  240
HVLRPPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-87bHLH family protein