PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0005721
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 260aa    MW: 29682.9 Da    PI: 5.2129
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0005721genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.9e-141764148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W+++Ed +l+ +++++G  +W+  ++  g+ R++k+c++rw +yl
  RcHm_v2.0_Chr5g0005721 17 KGPWSPDEDHKLIAYIQRYGIWNWSQMPKPAGLARSGKSCRLRWMNYL 64
                            79******************99************************97 PP
2Myb_DNA-binding53.17.2e-1770115148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++++eE+e ++++ + +G++ W+ Ia++++ gRt++++k++w+++l
  RcHm_v2.0_Chr5g0005721  70 RGNFSKEEEETIIKLQQNMGNR-WSVIAAKLP-GRTDNEIKNYWHTHL 115
                             89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MVRSSTQQCE EKRPLKKGPW SPDEDHKLIA YIQRYGIWNW SQMPKPAGLA RSGKSCRLRW  60
MNYLRPDIKR GNFSKEEEET IIKLQQNMGN RWSVIAAKLP GRTDNEIKNY WHTHLKRRLN  120
NDKAKSGENT SSETETFLLD KEAPKASQLE TSRENFSSSS SGIADEVYHQ PQIPEQQSIC  180
ETFGELQSLW TDSQVTSTAV ENSEAMFTDS AGFTLSSAAD QVWLQQEPIF QCGSYSDDAH  240
VPMSDYWVNL SVQSDETNGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-56MYB family protein