PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0008251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 128aa    MW: 14706.4 Da    PI: 4.8619
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0008251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind68.91.1e-212692260
                            HHHHHHHHHCTG........GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
            HSF_DNA-bind  2 Flkklyeilede........elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                            Fl+k+y++le+e          ++++sw+ +gn f+v+ + ef++ +LpkyFkh+nf+SF+RQLn+Y
  RcHm_v2.0_Chr5g0008251 26 FLSKTYDLLEEEeeedkdgsWKRSIVSWNGEGNGFIVWSPAEFSELLLPKYFKHNNFSSFIRQLNTY 92
                            9*********665556666567899****************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    
MCMDQHISEV NHGTSQSSRT RSPAPFLSKT YDLLEEEEEE DKDGSWKRSI VSWNGEGNGF  60
IVWSPAEFSE LLLPKYFKHN NFSSFIRQLN TYVSSLNSSL ASSIFIYIQN EISYRSINGL  120
YITTISMM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-24HSF family protein