PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0008291

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LSD

Protein Properties

Length: 125aa MW: 13543.5 Da PI: 6.9672

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0008291	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.1	1.4e-13	36	60	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP+GA++V+C++C+tV RcHm_v2.0_Chr5g0008291 36 CGSCRHLLTYPPGAKHVQCSCCQTV 60 ************************9 PP
2	zf-LSD1	41.7	1.8e-13	74	98	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GA sVRC++C +V RcHm_v2.0_Chr5g0008291 74 CGSCTTLLMYPYGALSVRCSSCSFV 98 **********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence
METKVQQADE APPPEAQPIV SQPPPPPLSE IAQMVCGSCR HLLTYPPGAK HVQCSCCQTV 60 NFVLEAHQVG QVKCGSCTTL LMYPYGALSV RCSSCSFVTE VRDHNMRPPW SAQQGQPTPP 120 SNSVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	7e-40	LSD family protein