PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0008581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 190aa    MW: 21373.2 Da    PI: 8.9321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0008581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-111364255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                     HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                            r+  + +E++RR++++  ++eL +llP++   +s+   s  +   +Av+YIk+Lq
  RcHm_v2.0_Chr5g0008581 13 RTDRKTIEKNRRNQMKALYSELNSLLPHQ---RSREvTSLPDQIDEAVNYIKKLQ 64
                            778899**********************9...88998*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MDQQQYPSSS SSRTDRKTIE KNRRNQMKAL YSELNSLLPH QRSREVTSLP DQIDEAVNYI  60
KKLQTNLEKM REKKDSQMGV ERITINNNGG SRRGVNGGGL RLPQIEIREM GSVLDVVLIT  120
GLDFQFMFEG SIRMLLEEGA DIVNASFSVV EDTIFHTIHS KIGESAPGPV AARISDRLRK  180
FVNEASTTAF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-50bHLH family protein