PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0008601
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 164aa    MW: 18099 Da    PI: 10.1349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0008601genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.3e-072381755
                            HHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                     HLH 17 NsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                            +  f++L++llP++   +s+   s  + L kAv+YIk+Lq
  RcHm_v2.0_Chr5g0008601  2 KALFSKLKSLLPHQ---SSREvASLPDELDKAVNYIKKLQ 38
                            6679*********8...78888*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MKALFSKLKS LLPHQSSREV ASLPDELDKA VNYIKKLQIN LEKMREKKDS LMRVAKIIKN  60
NNAGSVGGLT DGGLKSPQIE IRELGSALHV VLITRLDCQF MFRESIRVLN EEGADIVNAS  120
FSVVEDAILH IIHSKIGESA PTTVAARVSE RLRKFVNGSS TIAF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-42bHLH family protein