PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0008771
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 173aa    MW: 19772.8 Da    PI: 10.0858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0008771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-1859150190
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                             f+k+l++sdv+++gr+vlpkk ae++  +++ +e+++l+++d +s ++W +k++y  ++ks++yvl+ ++ +Fv++ g+++gD++ +
  RcHm_v2.0_Chr5g0008771  59 FEKQLKNSDVGSLGRIVLPKKEAEKYlpSLSDKEGIELRIRDaLSTQEWGLKYKYwsNNKSRMYVLE-NTGDFVRQSGVEVGDSIHL 144
                             99**************************77777999******9999*******99888888889999.*****************99 PP

                             EE-SSSEE CS
                      B3  83 kldgrsef 90 
                             +  +++++
  RcHm_v2.0_Chr5g0008771 145 Y--EDECK 150
                             9..44554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MSRQRRGNIL RTRKAARAAA ASSRLAVGKD PSSAVSETPN EQYIYSFCTP DNKKLRMLFE  60
KQLKNSDVGS LGRIVLPKKE AEKYLPSLSD KEGIELRIRD ALSTQEWGLK YKYWSNNKSR  120
MYVLENTGDF VRQSGVEVGD SIHLYEDECK NIVSSTLLSF LLWIKMSILI FKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.11e-48B3 family protein