PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0008831
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 116aa    MW: 13524.4 Da    PI: 8.4119
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0008831genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.1e-1136102162
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE- CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvlt 62 
                             f+k+ ++sdv++ gr+vlpk+ ae++  +++ +e+++l+++d +s+++W ++++y  +++s++yvl+
  RcHm_v2.0_Chr5g0008831  36 FKKEIKKSDVGSWGRIVLPKREAEKYlpSLSDKEGIELMIKDaLSNQEWGLTYKYwtNNNSRMYVLE 102
                             88999***********************77777999******9999*******99888999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    
MGGERDATDA GSDAQNNEQD LYLFCTPGQW KLRFLFKKEI KKSDVGSWGR IVLPKREAEK  60
YLPSLSDKEG IELMIKDALS NQEWGLTYKY WTNNNSRMYV LEHTGKMKFP FGYLFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.19e-30B3 family protein