PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0008871

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 156aa MW: 17702.3 Da PI: 7.8442

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0008871	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.8	6.7e-43	76	152	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+++C+adls+ak+y+rrhkvC++hskap+v+v gl+qrfCqqCsrfh+lsefDe+krsCrrrLa+hnerrrk++a RcHm_v2.0_Chr5g0008871 76 CQAQSCNADLSDAKQYYRRHKVCDFHSKAPAVIVGGLQQRFCQQCSRFHNLSEFDENKRSCRRRLAGHNERRRKSSA 152 **************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence
MEPNKAQGKR SLNFKTEEEE EEEEEDEDEE HASTVLLHGE DDRRKRVMVM NSTTSSASPS 60 KKGSGAGGST TTRPSCQAQS CNADLSDAKQ YYRRHKVCDF HSKAPAVIVG GLQQRFCQQC 120 SRFHNLSEFD ENKRSCRRRL AGHNERRRKS SADYSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	1e-41	SBP family protein