PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0008951
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 743aa    MW: 82049 Da    PI: 5.9857
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0008951genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-08207225625
                             -SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                             C+f+a+ G+C +G +C+F+H
  RcHm_v2.0_Chr5g0008951 207 CDFYAK-GWCIRGTSCRFIH 225
                             ******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    
MSASDDAQFP ALAQLSDDDD DDEDPEELEQ VDQELEEERD EVDMDISNSP IQAHHRDDRR  60
EDIKFEGISG HSGPGSSTWG KSEARPPSNT IDMEESTSNS NFSGTSNEPL RLKSQKTFAG  120
AGECRSQEFA ENDARILSGK KTSTHHTESH ANVKNVINSE DEMKQVVQST NDRKKMESRS  180
AASEIGTHIT SPLAETNDPN KRPAIVCDFY AKGWCIRGTS CRFIHTKDSP KNSHPQPEGD  240
VAAASCSREV KVDEGPRGIH ERSRLPGFHD PLASSSGNGF PFSSHLGIPR HHQFQSVQRE  300
ESNVGDSADV QKLHLPKDDL AFPTSYKDVG KDGFNNSPNK KGRYSIGNTS SHSSSMEDLA  360
GVWRQRVHSD HTSPLVSHSL NSSNTLIATG LFPSSRISTW NGFSLPASYS SLDANPLGSK  420
KLLDSNRDYH AYTRSSAFLK SSSPFTSSEL NNFPPISISQ HSAELKTKIS SNNWEPSVPF  480
RPSFILPSDF LSFSAKQYDP LRGSIELPKL ANNSFEAFYS EGATVGNRLH QKVLPETVSG  540
TLPPACDADT NSMSSHNTYN EKVLDNSCYT RDPNSPVTEA ETVGTSVVYQ NGTLTKDENP  600
LGHSQVKGST NPNKISIYGD SRQKSDGSSQ QRDIKVDRFR ENNEAEVEHL TDGDVQQESK  660
EMRQFRAALI ELVKELLKPK WREGSLSKDA HNKIVKKAVD KILSAFQPQQ IPPTIEAVTQ  720
YLSACRPKIS KLVEGYIERY GKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.18e-37C3H family protein