PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0008971
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 162aa    MW: 17542.8 Da    PI: 10.3076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0008971genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.3e-21960156
                     AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  RcHm_v2.0_Chr5g0008971  9 PHYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGN 60
                            68********.**********883....5*************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MAGSGSGQPH YRGVRKRPWG RYAAEIRDPW KKTRVWLGTF DTPEEAALAY DGAARSLRGN  60
KAKTNFPAPL TRGDLSLDLN VSSAQWASHS GRLVEFLHTG VLNDVVKSEE AAGSTSFVVS  120
RGPRPPVVGS SLVQEGSSTA SYLGFVRRGL PIDLNEPPPL WL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-45ERF family protein