PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0008991
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 264aa    MW: 28630.6 Da    PI: 9.9236
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0008991genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-202272256
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++ a+++++g+
  RcHm_v2.0_Chr5g0008991 22 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDTAAREFRGA 72
                            69*******.**********8...557*************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MAPRTEKTAT TAKPNGNVKE VHFRGVRKRP WGRYAAEIRD PGKKSRVWLG TFDTAEEAAK  60
AYDTAAREFR GAKAKTNFPL PSENVNLSLF KKNVGSNNIN NNNNNNGGGN SNSHSPSQSS  120
TVESSSREPA MMVESSSPLD LNLAHGVSSG HAGFGAPMRF PFQHHQIPAI GAVIGVPTSA  180
ANHVLYFDSV FRAGMVKNHQ QYQQQLRFDR NLIHRDFLSG GGFTSGSQSD SDSSTVVDLN  240
HHDHQPRGGG FDLDLNLPPP AELA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-29ERF family protein