PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0009331
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 338aa    MW: 38009.6 Da    PI: 8.0838
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0009331genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.15.1e-34602001128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                             lp+G++F+Ptd+e++ ++L++kv +++      ++  e   +++   +i++++P++Lp  v++e +  +fF++ +k+y+tg+rk+r+
  RcHm_v2.0_Chr5g0009331  60 LPAGVKFDPTDQEIL-QHLEAKVLTDTrklhplID--EfipTLEGEnGICSTHPEKLP-GVNKEGQIRHFFHRPSKAYTTGTRKRRK 142
                             799***********9.99****9999956644322..22222333336**********.666677788******************7 PP

                     NAM  78 tk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             ++      + +W++tgk+++vl+ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  RcHm_v2.0_Chr5g0009331 143 VHteedgsETRWHKTGKTRPVLT-NGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 200
                             44446555778************.999***********66589**************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MTWHSDDDEE EERAIQSVAP SSATNYPQSK NNKTNEISCP SCGHPIDIQD QAGIHDLPGL  60
PAGVKFDPTD QEILQHLEAK VLTDTRKLHP LIDEFIPTLE GENGICSTHP EKLPGVNKEG  120
QIRHFFHRPS KAYTTGTRKR RKVHTEEDGS ETRWHKTGKT RPVLTNGAVK GFKKILVLYT  180
NYGRQRKPEK TNWVMHQYHL GNNEEEKDGE LVLSKVFYQT QPRQCGMGTP GIRDGGPPLL  240
NPFDSHHHKG HVNIRSGQDG NSLPLPLPPK KAGVVEYYNH NQPGPFMNYD HPHLIQGGQN  300
RDIPAQLIPN MVLQGDGSSL FRYNTADTSK GKLIERKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC family protein