PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0009511

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

VOZ

Protein Properties

Length: 484aa MW: 53766.4 Da PI: 6.2967

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0009511	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	444.8	1e-136	208	424	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatak 87 pppsaflgpkcalwdc+rpaqg +w+qdycssfha+lalneg+pg++pvlrp+gi+lkdgllfaalsak+qgk+vgipecegaatak RcHm_v2.0_Chr5g0009511 208 PPPSAFLGPKCALWDCPRPAQGLDWCQDYCSSFHAALALNEGPPGMAPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAK 294 89*********************************************************************************** PP VOZ 88 spwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyei 174 spwna+elfdl +lege +rewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyei RcHm_v2.0_Chr5g0009511 295 SPWNAPELFDLLVLEGEMLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEI 381 *********************************************************************************** PP VOZ 175 neldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 n++da+alyrlelklvd+kk++kgk+s+ds+adlqk++grl+a RcHm_v2.0_Chr5g0009511 382 NKCDACALYRLELKLVDGKKNSKGKLSNDSVADLQKQMGRLSA 424 ***************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MRKGSKSNCK SVSHKLFKDK AKNRVDDLQG MFMDLQFARK ESRTIDATLL EEQVHQMLRE 60 WKSELNEPSP ASSLQQGGSV GSFSSDICRL LQLCEEEDDA SSPLAAPKPE PNDQKLEVGE 120 SLVFQEGFSV NHRQQEHGFP LADQGKSSLL GVRSAGVNNL EGANQLDYQQ FDLHQDFDHN 180 YYSCFNGTAL SAGDALSHVT SYLPSICPPP SAFLGPKCAL WDCPRPAQGL DWCQDYCSSF 240 HAALALNEGP PGMAPVLRPG GIGLKDGLLF AALSAKAQGK DVGIPECEGA ATAKSPWNAP 300 ELFDLLVLEG EMLREWLFFD KPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR 360 SYYMDPQPLN HFEWHLYEYE INKCDACALY RLELKLVDGK KNSKGKLSND SVADLQKQMG 420 RLSAEFPSDN KRNVKGRAKV NAKVGVGTVY YTPTRGTATN GTFDYGTGPP YDYLVDNLSG 480 YYLT

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MRKGSKSNCK SVSHKLFKDK AKNRVDDLQG MFMDLQFARK ESRTIDATLL EEQVHQMLRE  60
WKSELNEPSP ASSLQQGGSV GSFSSDICRL LQLCEEEDDA SSPLAAPKPE PNDQKLEVGE  120
SLVFQEGFSV NHRQQEHGFP LADQGKSSLL GVRSAGVNNL EGANQLDYQQ FDLHQDFDHN  180
YYSCFNGTAL SAGDALSHVT SYLPSICPPP SAFLGPKCAL WDCPRPAQGL DWCQDYCSSF  240
HAALALNEGP PGMAPVLRPG GIGLKDGLLF AALSAKAQGK DVGIPECEGA ATAKSPWNAP  300
ELFDLLVLEG EMLREWLFFD KPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR  360
SYYMDPQPLN HFEWHLYEYE INKCDACALY RLELKLVDGK KNSKGKLSND SVADLQKQMG  420
RLSAEFPSDN KRNVKGRAKV NAKVGVGTVY YTPTRGTATN GTFDYGTGPP YDYLVDNLSG  480
YYLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	VOZ family protein