PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0009691

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 400aa MW: 43662.6 Da PI: 8.7994

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0009691	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	61	121	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ RcHm_v2.0_Chr5g0009691 61 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 121 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.4	4.8e-36	60	122	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k RcHm_v2.0_Chr5g0009691 60 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 122 689**********************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MASSNRHWPS MFKSKPTHHQ WQHDVINPSI VPNGSCHRPP YTTTTATTSS GIEDQRTPEP 60 KPRWNPRPEQ IRILEAIFNS GMVNPPRDEI RKIRAQLQEY GQVGDANVFY WFQNRKSRSK 120 HKLRLQHINS KQQQQSHKPS LTAAPSSSSS SSERSSPNKQ QQQSNKAFSM GFSSPPHVVT 180 THDVSNINSP TASVNQTSFF HALPNPEVLP ESAYFFPVNN PSSTNGPVAS GSFSTTQGFC 240 FSELANVVHV NNSPDLHGPC TSLLLSEIMN NNGMASRKNG QDQEMKGTKM DQLQQQLNYN 300 GAVTTSPTTT GAVNVAVPSP MTHIQGVGEA GAAIMGAGGA AKSMVFINDV AFEVAAGPFN 360 VREAFGDDAV LIHSSGHPVL TNEWGVTLHS LHHGAFYYLI

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MASSNRHWPS MFKSKPTHHQ WQHDVINPSI VPNGSCHRPP YTTTTATTSS GIEDQRTPEP  60
KPRWNPRPEQ IRILEAIFNS GMVNPPRDEI RKIRAQLQEY GQVGDANVFY WFQNRKSRSK  120
HKLRLQHINS KQQQQSHKPS LTAAPSSSSS SSERSSPNKQ QQQSNKAFSM GFSSPPHVVT  180
THDVSNINSP TASVNQTSFF HALPNPEVLP ESAYFFPVNN PSSTNGPVAS GSFSTTQGFC  240
FSELANVVHV NNSPDLHGPC TSLLLSEIMN NNGMASRKNG QDQEMKGTKM DQLQQQLNYN  300
GAVTTSPTTT GAVNVAVPSP MTHIQGVGEA GAAIMGAGGA AKSMVFINDV AFEVAAGPFN  360
VREAFGDDAV LIHSSGHPVL TNEWGVTLHS LHHGAFYYLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45980.1	4e-50	WOX family protein