PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0009701

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 379aa MW: 42464.6 Da PI: 7.9936

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0009701	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	105.1	5.9e-33	17	114	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqq 86 aCaaC+++r++C++dCv+apyf a+++++f++vhklFG+sn++kllk+l++++ r +a++s ++eA ++ +dP+ G +g +++l+++ RcHm_v2.0_Chr5g0009701 17 ACAACRHQRKRCEEDCVMAPYFTADKEEEFKAVHKLFGVSNMSKLLKQLEDQNhRAQAVQSFIWEAYMWKQDPIAGPLGKYKALEEE 103 7**********************************************87776******************************* PP DUF260 87 leqlkaelall 97 e l++ l++ RcHm_v2.0_Chr5g0009701 104 CEYLRNLLNSS 114 99998877665 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MSIGSSNTGE PSGGRHACAA CRHQRKRCEE DCVMAPYFTA DKEEEFKAVH KLFGVSNMSK 60 LLKQLEDQNH RAQAVQSFIW EAYMWKQDPI AGPLGKYKAL EEECEYLRNL LNSSRPEQES 120 MGVVYQGNTK GEVEGGGVPI YGRGLNYGYT DQTLGLDHGC TTSFTSLLQG QDTESSKGLA 180 DCVSVASAYQ MPISQSQGRG FQDHRRIGME SFNFFHQYPT VQGANVHNYR PVQVQGRGRG 240 TGGIMIDCAR TCNGLVVYDP HTGQVQQREI GAMGPQVGPI LSSHRRGTSQ RFSPYDQHNP 300 IQVPRQAMRQ QDQNQQSFPA QHQWDTNSQS CDNFQGKGHK ISFFLFVFDT AFGKVLLLIY 360 CYCGLLHKYC DRVIKKTTN

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MSIGSSNTGE PSGGRHACAA CRHQRKRCEE DCVMAPYFTA DKEEEFKAVH KLFGVSNMSK  60
LLKQLEDQNH RAQAVQSFIW EAYMWKQDPI AGPLGKYKAL EEECEYLRNL LNSSRPEQES  120
MGVVYQGNTK GEVEGGGVPI YGRGLNYGYT DQTLGLDHGC TTSFTSLLQG QDTESSKGLA  180
DCVSVASAYQ MPISQSQGRG FQDHRRIGME SFNFFHQYPT VQGANVHNYR PVQVQGRGRG  240
TGGIMIDCAR TCNGLVVYDP HTGQVQQREI GAMGPQVGPI LSSHRRGTSQ RFSPYDQHNP  300
IQVPRQAMRQ QDQNQQSFPA QHQWDTNSQS CDNFQGKGHK ISFFLFVFDT AFGKVLLLIY  360
CYCGLLHKYC DRVIKKTTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	3e-25	LBD family protein