PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0009711
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 170aa    MW: 18939.3 Da    PI: 10.1379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0009711genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.6e-2062112255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrd      ++ +r++lg+f taeeAa a+++a+ +++g
  RcHm_v2.0_Chr5g0009711  62 HYRGVRRRP-WGKYAAEIRD----SaRHgARVWLGTFNTAEEAALAYDQAAFRMRG 112
                             8********.**********....33236*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MVLASQHELP LNENDSQDMV ICQALNEAMA LNHSSVPETH QIPNHQSTSN GLKPVKNLGK  60
KHYRGVRRRP WGKYAAEIRD SARHGARVWL GTFNTAEEAA LAYDQAAFRM RGSKAILNFP  120
AEFVASLSIE RVQPSLFSVP SNTSTTTEAP KISESERNTT TTVKARHMQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-32ERF family protein