PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0009741
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 268aa    MW: 30074.5 Da    PI: 4.5755
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0009741genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-19124174255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  RcHm_v2.0_Chr5g0009741 124 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAALAYDKAALRIRG 174
                             8********.**********3...2234*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MAVHSVNHDS AAAPEAILEN VWASFIGVDG GNQETSNTPE MSKSWEELPS LDGREGSMEI  60
LQRLPSLGRW MSMGAEAWEE LLDTHIIPSC DIEKSCNEKL EDNEDAKPEA EEKVERVEKV  120
ATKHYRGVRR RPWGKYAAEI RDSSRKGARV WLGTFETAEE AALAYDKAAL RIRGTKAHLN  180
FPFETVAKAM GLENCSFNNI CSSTTSSQNG LNPRKRGVRE WEENVEVMTG EPALKRNASM  240
EKMFGDEFDV FEFQDLGTDY LDSLLSSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.14e-46ERF family protein