PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0010031

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 246aa MW: 28087.8 Da PI: 4.8435

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0010031	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112	8.1e-35	94	177	3	97
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgk 89 ++kdrhski+T++g+RdRR Rlsa++a++f+d+qd+LGfd++sk+i+WL+ +ak+ai +l ++s++++ + ++ g+ RcHm_v2.0_Chr5g0010031 94 ARKDRHSKIYTSKGPRDRRFRLSAQTAIEFYDVQDRLGFDRPSKAIDWLIHKAKAAIEALEDSSTTHQPQH---HQ--------GGN 169 69*************************************************************77766222...11........111 PP TCP 90 aaksaaks 97 a++++ k+ RcHm_v2.0_Chr5g0010031 170 AEPETVKT 177 11111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MFVKLERKKR ETSMTSHSQE SLYLQMSQQR ESKQEEEEEE EEEEENEAQD QPEVAQAQQD 60 YGASRVESKQ PSMNNERYGR IVKVQGGHVI RSIARKDRHS KIYTSKGPRD RRFRLSAQTA 120 IEFYDVQDRL GFDRPSKAID WLIHKAKAAI EALEDSSTTH QPQHHQGGNA EPETVKTHQP 180 LDEGTMKNES KEPVLDYAEE ALNCAPNLSE ANFMEMGWFQ SLMAWNYNAG DGGEGCSFNS 240 SSVTLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	3e-39	TCP family protein