PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0010631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 262aa    MW: 28607.3 Da    PI: 8.9706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0010631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-1175121354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++h+e+ErrRR+riN  +++Lr l+P +     +K++Ka+ L ++++ +k+L
  RcHm_v2.0_Chr5g0010631  75 KNHSEAERRRRERINAHLSTLRGLVPRN-----EKMDKAALLAEVIRQVKEL 121
                             58************************98.....8***********9988887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MAFYSFDSNP TIGSDYSSLF NPFTLHGSGG GLTNGSVQLL PHSLVLDSEK GELVKAPARV  60
GKKGVSEAKA LAALKNHSEA ERRRRERINA HLSTLRGLVP RNEKMDKAAL LAEVIRQVKE  120
LKKDSLESSK GFLIPIDADE VKVEHYDSGV GDGTISVRAS ICCEYRSELL SDLKEALDSL  180
HLKMVKAEMA TLGNRVHNVF VLTGYNKGNN DAEAYQLLAS SVHHALSSVL DKASISPEYS  240
PRTTLPTKRR RTSYFDTSSS SS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-32bHLH family protein