PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0011011

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 197aa MW: 21770.4 Da PI: 7.128

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0011011	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	30.3	9.1e-10	103	126	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 prlrWtp+LH +F++a+e LGG+e RcHm_v2.0_Chr5g0011011 103 PRLRWTPQLHLSFLHALELLGGHE 126 8*********************97 PP
2	Myb_DNA-binding	40	8.9e-13	104	185	1	48
TSSS-HHHHHHHHHHHHHTTTT.................................-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.................................tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+++++ +++a ++lGg+ t+k++ + m+ g++ ++ks++q+y+ RcHm_v2.0_Chr5g0011011 104 RLRWTPQLHLSFLHALELLGGHeskfadlkdnvtsllhgfsaltlliggytytgaTPKLVLQLMNvRGLSISHVKSHLQMYR 185 89******************************************************************************97 PP
3	G2-like	49.3	1.1e-15	156	186	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk +l+lm+v gL+++hvkSHLQ+YR+ RcHm_v2.0_Chr5g0011011 156 TGATPKLVLQLMNVRGLSISHVKSHLQMYRS 186 469***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MNELELIGDQ KEKTDKNISE DQAENISVGS SQKCSCFDLN EEASDNSDND ISNANVNLAD 60 NELSTVRNDE CRALAQGNIN SNAATISNSS RVKVRPYVRS KLPRLRWTPQ LHLSFLHALE 120 LLGGHESKFA DLKDNVTSLL HGFSALTLLI GGYTYTGATP KLVLQLMNVR GLSISHVKSH 180 LQMYRSKKLD RDGQGKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-22	G2-like family protein