PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0011961

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 436aa MW: 48895.4 Da PI: 4.9666

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0011961	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	25.9	2.6e-08	14	48	2	36
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHH CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldeeef 36 Fl+k+ye+++d ++++++sws++++sf+v+++ +f RcHm_v2.0_Chr5g0011961 14 FLSKTYEMVDDCSTDSIVSWSASNRSFIVWNPPDF 48 9******************999*****9888 PP
2	HSF_DNA-bind	34.9	4.2e-11	48	88	53	102
HHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 53 FvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 F+RQLn+YgF+k++ e+ weF+++ F +g+ +l+++i+r+k RcHm_v2.0_Chr5g0011961 48 FIRQLNTYGFRKIDPEQ---------WEFANDDFVRGQPQLMKNIHRRKP 88 9**********9998.........*******************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MDEVQGVSGS LPPFLSKTYE MVDDCSTDSI VSWSASNRSF IVWNPPDFIR QLNTYGFRKI 60 DPEQWEFAND DFVRGQPQLM KNIHRRKPVH SHSVPNLQVQ GQGQGSSSLS EAERKSMKDE 120 IERLNHEKER LAVELQRHEQ ERQGMELQMQ FLKDRLQHMQ RQQQTMASVV ARVLQRPDIA 180 LNPLPQFELC GRKRRFSSVD LAYDQVSIGS GQMGSWENVT GGNMEMGKVL QLESFLTFWE 240 DTIHDVAETQ LQANTNMELT ESTSCAESPA VSCMQRIVDH QSKSPTAIDM NTEPAAAVSP 300 VPARSVSPAP AGSVSLERAR SVSAEPTRSV SLECARSVSP EPTRSVSLEP DASKQQPSKE 360 QTAKITGAGV NDLFWEQFLT ENPGSTDSQE VQLERNDSDG RGNEINPSDH GKLWWNMRNV 420 NNLTEQMGHL SPVEKT

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MDEVQGVSGS LPPFLSKTYE MVDDCSTDSI VSWSASNRSF IVWNPPDFIR QLNTYGFRKI  60
DPEQWEFAND DFVRGQPQLM KNIHRRKPVH SHSVPNLQVQ GQGQGSSSLS EAERKSMKDE  120
IERLNHEKER LAVELQRHEQ ERQGMELQMQ FLKDRLQHMQ RQQQTMASVV ARVLQRPDIA  180
LNPLPQFELC GRKRRFSSVD LAYDQVSIGS GQMGSWENVT GGNMEMGKVL QLESFLTFWE  240
DTIHDVAETQ LQANTNMELT ESTSCAESPA VSCMQRIVDH QSKSPTAIDM NTEPAAAVSP  300
VPARSVSPAP AGSVSLERAR SVSAEPTRSV SLECARSVSP EPTRSVSLEP DASKQQPSKE  360
QTAKITGAGV NDLFWEQFLT ENPGSTDSQE VQLERNDSDG RGNEINPSDH GKLWWNMRNV  420
NNLTEQMGHL SPVEKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-101	HSF family protein