PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0013531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20307.2 Da    PI: 10.3676
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0013531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53e-221155347
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                            + ++s rqvtfskRr+g++KKA+E+ +LC+aeva+++fs+ gk +
  RcHm_v2.0_Chr5g0013531 11 VMDSSSRQVTFSKRRTGLFKKAHEIATLCGAEVAIVVFSPGGKPF 55
                            66899***********************************99855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MGRRKIEMKK VMDSSSRQVT FSKRRTGLFK KAHEIATLCG AEVAIVVFSP GGKPFSFGNP  60
NVDSVADRFL NQEEEDNTDD RGVRRSGKVV ERLNQQLADV VKNLEAEKKR GEVIAKALVK  120
AETKWGLTIQ ERSHGELVKV KQSLEELHES VKARESDMEA SSSLLLLANK PAKETKKTVA  180
KSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-48M-type_MADS family protein