PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0015031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 264aa    MW: 28427.8 Da    PI: 6.7093
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0015031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.31.1e-428106199
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh+++Gasnv k+l++l+  +reda++sl+yeAear+rdPvyG+vg+i+ lq++l
  RcHm_v2.0_Chr5g0015031   8 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHRVYGASNVAKILNELNAAHREDAVTSLAYEAEARLRDPVYGCVGLISILQNRL 94 
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallke 99 
                             +ql+++l  +k+
  RcHm_v2.0_Chr5g0015031  95 KQLQTDLYNAKK 106
                             ******988876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MSSNTHSPCA ACKFLRRKCT QECVFAPYFP PDQPQKFANV HRVYGASNVA KILNELNAAH  60
REDAVTSLAY EAEARLRDPV YGCVGLISIL QNRLKQLQTD LYNAKKDLST YIGPQALMIP  120
VFHPQQPEMN GGGTMSVPML GVPTGPQQGG LAGGQLVIRD QQQQQQMFEA QQQELVRFNV  180
NGMDNGNGFN QMAGGGGSGG GGSNGVVSAG SLGLGGFDNN AFNNQMQAAA AAHHHQHSLD  240
YQLQAQLMLQ PQQQSQPKSE GEES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.13e-67LBD family protein