PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0015901
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family BES1
Protein Properties Length: 163aa    MW: 17491.6 Da    PI: 9.3227
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0015901genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822122.17.2e-3851043103
                  DUF822   3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasas 89 
                             sg  +++ E+E+++ RER+RRai++ki+ GLR++G+yklp raD+neVl+ L++eAGw ve+DGttyr + k l+   a g s+  +
  RcHm_v2.0_Chr5g0015901   5 SGSGRSESEKEKTRIRERHRRAITTKIFHGLRKHGGYKLPPRADINEVLRHLAKEAGWRVEPDGTTYR-SNKVLDFCPACGISKAST 90 
                             6666788999**********************************************************.555555555555555444 PP

                  DUF822  90 pesslqsslkssal 103
                              ++  + +++ss +
  RcHm_v2.0_Chr5g0015901  91 ATAIATPTPSSSVV 104
                             44333333333332 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MAGTSGSGRS ESEKEKTRIR ERHRRAITTK IFHGLRKHGG YKLPPRADIN EVLRHLAKEA  60
GWRVEPDGTT YRSNKVLDFC PACGISKAST ATAIATPTPS SSVVMAGGEC STTASPYRLP  120
EFNSSGSGTH SICPLSLMSE GELHHLPEVR ASDHSTPVAS PHS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.15e-20BES1 family protein