PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0016461
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 198aa    MW: 23451.5 Da    PI: 9.8653
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0016461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-163375244
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                             i+n+  r+vtf kR++g++KK +EL  LCd++ +vii+ +++
  RcHm_v2.0_Chr5g0016461 33 LIKNEKSRNVTFRKRKKGLMKKTYELNKLCDVQCSVIIYENKN 75
                            59************************************97754 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MLVLVRSLMH FTYFLCMFSQ IMGRSNTKLP LELIKNEKSR NVTFRKRKKG LMKKTYELNK  60
LCDVQCSVII YENKNGQLVR PDTYPENPEE VKQIIDRFVS KSAKVRKVEN LADFFGKQIM  120
QVKKETAKLH QRNNEARFPS WHDMLDDFSL DQLLALLKKL EHKIEDVHKH YDKQCVIDDS  180
ILRQTVCAFL FSSFNLFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14549RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-12M-type_MADS family protein