PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0019291
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 320aa    MW: 37076.7 Da    PI: 8.3301
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0019291genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.84.4e-49351632128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                              pG+rFhPtdeelv +yL++kve+k+++l e ik +diyk++PwdLp++   +ekewyfF++r kky+++ r+nr+tksg+Wkatg 
  RcHm_v2.0_Chr5g0019291  35 LPGYRFHPTDEELVRFYLRRKVENKPIRL-ELIKLIDIYKYDPWDLPTSGLVGEKEWYFFCRRGKKYRNSIRPNRVTKSGFWKATGI 120
                             59***************************.89***************6556689********************************* PP

                     NAM  89 dkevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128
                             dk+v+s +ge    +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  RcHm_v2.0_Chr5g0019291 121 DKPVYSVEGEFhtcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 163
                             ******85554566***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MIRRHQEEEA KQKMEVQKMM MRDSINNTKD DADYLPGYRF HPTDEELVRF YLRRKVENKP  60
IRLELIKLID IYKYDPWDLP TSGLVGEKEW YFFCRRGKKY RNSIRPNRVT KSGFWKATGI  120
DKPVYSVEGE FHTCIGLKKS LVYYRGSAGK GTKTDWMMHE FRLPATNAST GANSNINDIT  180
QEAEVWTLCR ILKRTNSSRK YETNWQKTTS KQSAADSSSK TCSSESDGSF GAPAAQKNDQ  240
LERISTPNFN NDHLCEGNNH ISAGQLTLKD EVVDPMVNSS YINFWNLNEY EMLRSDNPNW  300
DELSPMIDCV LNPSPLYRSV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-84NAC family protein