PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0019351
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 819aa    MW: 91611.5 Da    PI: 6.008
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0019351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.44e-06160182426
                             ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             e+C+f+ +tG Ck+G++ +F+H+
  RcHm_v2.0_Chr5g0019351 160 EECSFYPKTGNCKFGSNRRFNHP 182
                             89***************999998 PP
2zf-CCCH29.51.3e-09207231327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             + +C++++r G CkyG+ C+++Hg+
  RcHm_v2.0_Chr5g0019351 207 QTECKYYLRPGGCKYGEACRYNHGK 231
                             568********************96 PP
3zf-CCCH36.39.1e-12253276326
                             S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              ++C++++r+G CkyG++C+F+H+
  RcHm_v2.0_Chr5g0019351 253 KRECPYYMRNGSCKYGSNCRFNHP 276
                             689********************8 PP
4zf-CCCH27.45.8e-09384410127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++lC+ff+rtG Ck+ ++Ck++H++
  RcHm_v2.0_Chr5g0019351 384 PGQRLCSFFLRTGDCKFKSNCKYHHPK 410
                             5799*********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    
MELSESSSSV SPNLDLHIGN SNEIDQVQLN HSDIGSQRST AADQQLDNHS GGDAAVSHSS  60
PDPDVVDVVD HAVVDEIGRL DLRGDDVAVE VAAAEVEEKK EEGGEVEAEE KSSNGGGGEI  120
NESERQSEEE ENRSENGGEG EKKGGEYNRR YQYPVRPEAE ECSFYPKTGN CKFGSNRRFN  180
HPVRRKNNQV FKDKVKEKDE LSEKPSQTEC KYYLRPGGCK YGEACRYNHG KGKPSVAPVV  240
ELNFLGLPIR RGKRECPYYM RNGSCKYGSN CRFNHPNPTA AGGSDPPSGF DNGGPASLQG  300
GSQSSSWSAP RSLNETPLCM PMMMPPSQGV PSQNTEWNGY QSPVYLERSM PARPPYVINN  360
SGTKTKVYKQ YPPSNQVDEF QERPGQRLCS FFLRTGDCKF KSNCKYHHPK SQTEVSPSFA  420
LSDKGLPLRP LFRPAYAIML THLRSEALEN FKIRLERSLV QREGFASSII AHSESCMREF  480
DQACADVAIN SNGNAYGIDK EKAKRKLKCD IEAYASSQLD EQLSRLKLDC ERQLWEALSL  540
NDPIAALLRD GDDDIWRKKR GLLHDAIELV DERFSNEING YALDQGRSAE MLQILRDYAR  600
RVAKEKPRQE ASCVLTHMIN RFLQAFNYDS DENARTWTVG VDIRIITHSA RHESLKILST  660
LAAIRLDKTQ DDIERVLSST LIGGEISSTN VLDSVTWDMV SSNDTLITPL ECQSLWRQFK  720
EQTEPAIFQA YATQVLHRRI NSAPNDDAPN DPEFSPFIWI IVVIVVLLST AYGIPNAASL  780
VPEILALLPR FRSQALTLSA IIVAVKKIVE AYRNRRLQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.14e-88C3H family protein