PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0019651
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 254aa    MW: 28526.9 Da    PI: 5.4406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0019651genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-155599147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            rg+ T++E +l+++ +k+lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr5g0019651 55 RGKITEDEKDLIIRMHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNSI 99
                            8999******************.*********.***********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MGRYAGFEKG GLKKGTWSAC EDQVLKDYVK KHGLKRCGKS VRLRWLNYLR PGIKRGKITE  60
DEKDLIIRMH KLLGNRWSLI AGRIPGRTDN EIKNYWNSIL RKNVGEEKER ESEVSRNEII  120
KENLPSLAED DGHPHLTKCD EVLGGGGGLD CFASDVNVEE DHRHRCLGRT STDTTTLSPG  180
VGVEIGGGAN QDIQPTGDDL NYNAITWKDS IMDLNGGQLD ISEFLQSDDF STFWDSDRLM  240
NFEIGGCSTM NYDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.12e-44MYB family protein