PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0020391
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29878.8 Da    PI: 6.9964
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0020391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.98.3e-26959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            +rien + rqvtf+kRr+g+lKK +ELSvLCd+++ ++ifsstgk++ y+s
  RcHm_v2.0_Chr5g0020391  9 SRIENRTTRQVTFAKRRAGLLKKTHELSVLCDVQIGLVIFSSTGKMFQYCS 59
                            59***********************************************96 PP
2K-box57.94.5e-2072170299
                   K-box   2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                             q +sg++  +++++  l+ e++k++ke++ L  ++ ++ GedL+   +++L++Le++Le+s++++R++K e+l +++++l+   k+ 
  RcHm_v2.0_Chr5g0020391  72 QYASGTRiPQHSDTDFLNAEIRKIRKETQDLHLSLQRYTGEDLSCVRFEDLEELENRLEESVNRVRARKFEILQQEVHNLRLSTKQR 158
                             556777777889999************************************************************************ PP

                   K-box  88 qeenkaLrkkle 99 
                             +e+n +L + ++
  RcHm_v2.0_Chr5g0020391 159 EEQNDELCHLIK 170
                             *****9988776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MGRGKIHISR IENRTTRQVT FAKRRAGLLK KTHELSVLCD VQIGLVIFSS TGKMFQYCSD  60
STSMEEIIRR YQYASGTRIP QHSDTDFLNA EIRKIRKETQ DLHLSLQRYT GEDLSCVRFE  120
DLEELENRLE ESVNRVRARK FEILQQEVHN LRLSTKQREE QNDELCHLIK EHQAAVFAHQ  180
HHYQQQMEME PKSEEHRQLM EQFPFCGEEQ PLLQLATTSM QPQFAYQAST SSLPPNPPQL  240
HDFSLNTPIY GIHKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.25e-48MIKC_MADS family protein