PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0021591
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 299aa    MW: 33818.9 Da    PI: 7.0955
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0021591genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151764148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg W++eEde+l + ++  G g+W++I++  g+ R++k+c++rw +yl
  RcHm_v2.0_Chr5g0021591 17 RGLWSPEEDEKLMNHIHNSGHGSWSSIPKIAGLERCGKSCRLRWINYL 64
                            788*******************************************97 PP
2Myb_DNA-binding48.42.2e-1570113146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+++++E+ +++d+++  G++ W+ Ia+ m+ gRt++++k++w++
  RcHm_v2.0_Chr5g0021591  70 RGSFSQQEERIIIDVHRVVGNR-WAQIAKQMP-GRTDNEVKNFWNS 113
                             899*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MSINTGHNCC SKQKVKRGLW SPEEDEKLMN HIHNSGHGSW SSIPKIAGLE RCGKSCRLRW  60
INYLRPDLKR GSFSQQEERI IIDVHRVVGN RWAQIAKQMP GRTDNEVKNF WNSCIKKKLI  120
SQGLDPNTHN LIIPAASDSK SSHDSSSLHG SSSSTIPTYL YQSPNMVWTD HFQEPYPRGS  180
QPSMEKSKVP TISSFSHHFY PSELDIIIEN CKTWGTGSSI ESTTAEPAEM EYMSMKAEQK  240
EESCEVQTEN GSCSVLNYNG RQTSMDACSF GSCNLSNFDF VESTLVPCEM DYHLRPIRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.16e-77MYB family protein