PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0022581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 75aa    MW: 8307.61 Da    PI: 9.0126
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0022581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.4e-081151024
                            GGTS--TTTTT-SS- CS
                 zf-CCCH 10 artGtCkyGdrCkFa 24
                            ++ G+CkyG++C+F+
  RcHm_v2.0_Chr5g0022581  1 MKIGECKYGAQCRFH 15
                            899***********7 PP
2zf-CCCH40.93.5e-135072426
                            ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                            ++C ++++tGtCkyG++C+F H+
  RcHm_v2.0_Chr5g0022581 50 AICVYYLQTGTCKYGATCRFDHP 72
                            79********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    
MKIGECKYGA QCRFHYPIDR PAVALSTTKP SQQENVKLTL AGLPRREGAA ICVYYLQTGT  60
CKYGATCRFD HPSPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-29C3H family protein