PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0022711
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 94aa    MW: 10071.5 Da    PI: 9.5235
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0022711genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.2e-101171026
                            GGTS--TTTTT-SS-SS CS
                 zf-CCCH 10 artGtCkyGdrCkFaHg 26
                            ++tG+CkyG++C+F+H+
  RcHm_v2.0_Chr5g0022711  1 MKTGECKYGAQCRFHHP 17
                            89**************8 PP
2zf-CCCH352.5e-115473827
                            GGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                            ++++tG CkyG++C+F H+p
  RcHm_v2.0_Chr5g0022711 54 YYLKTGACKYGATCRFDHPP 73
                            8*****************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    
MKTGECKYGA QCRFHHPIDR PAVALSTTKP SQQENVKLTL AGLPRREGAV IYVYYLKTGA  60
CKYGATCRFD HPPPGEVVAM AASQGKSDST GGKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.19e-34C3H family protein