PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0022731

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 109aa MW: 12085.8 Da PI: 8.4768

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0022731	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.7	1.7e-07	39	51	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 +CkyG++C+F+H+ RcHm_v2.0_Chr5g0022731 39 ECKYGAQCRFHHP 51 6***********8 PP
2	zf-CCCH	40.4	4.9e-13	84	106	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ++++tGtCkyG++C+F H+ RcHm_v2.0_Chr5g0022731 84 VICVYYLKTGTCKYGATCRFDHP 106 68********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence
MASAARATSY MMSSWPSPDA EPGPPGFKRT SEVLYEDWEC KYGAQCRFHH PIDRPAVALS 60 TTKLSQQENV KLTLAGLPRR EGAVICVYYL KTGTCKYGAT CRFDHPSPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	2e-28	C3H family protein