PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0022751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 63aa    MW: 6646.72 Da    PI: 9.7365
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0022751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.51.1e-131942427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                            ++C ++++tGtCkyG++C+F H+p
  RcHm_v2.0_Chr5g0022751 19 VICVYYLETGTCKYGATCRFDHPP 42
                            68********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    
MRPRRRSVAK VLPSAMGAVI CVYYLETGTC KYGATCRFDH PPPGEVVAMA ASQAKSDSTG  60
GKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.15e-16C3H family protein