PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0022761

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 225aa MW: 24422.2 Da PI: 8.9549

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0022761	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.6	4.9e-09	4	24	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +f+++tG+CkyG+ CkF+H++ RcHm_v2.0_Chr5g0022761 4 HFYLKTGQCKYGAPCKFNHPK 24 59*****************96 PP
2	zf-CCCH	39.5	9.6e-13	74	99	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ RcHm_v2.0_Chr5g0022761 74 PGEADCPFYLKTGSCKYGATCRYNHP 99 57899********************9 PP
3	zf-CCCH	28.4	2.8e-09	188	204	11	27
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 +tGtCkyG++C+F H+p RcHm_v2.0_Chr5g0022761 188 KTGTCKYGATCRFDHPP 204 79*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MFKHFYLKTG QCKYGAPCKF NHPKDIQIPS ATQENKSGET ETAIKTEGFE VAVKPLVSFS 60 AALLYYSKEL PVRPGEADCP FYLKTGSCKY GATCRYNHPD RYDINLPVAA ISYSLSVPSV 120 AGIFVLWERA LLFVLSALDR LSVKFHHPID RPAVALSTTK PSQQENVKLT LAGLPRREGA 180 VICVCCPKTG TCKYGATCRF DHPPPGAVVA MAASQAKSDS TGGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	5e-62	C3H family protein